For pretty much all of season two she's reviled and hated by the galactica crew, yet she works so hard to prove to them she wont turn against them, only to be repaid by having cells forcefully removed from the fetus she's carrying in order to treat president roslin.
In season 3, the crew seem double minded about her, willing to accept her back into the foldas a combat pilot, yet as you've probably seen in the episode where they look for the algae planet, they treat her as a pit canary, looking for a safe route through the radiation.
whats interesting to me is ( possible spoiler )that admiral adama seems to treat her like a daughter, confiding in her about various problems
im not sure how far into season three you are, but i've seen up to episode 13.