A list of perhaps not as obvoius references in Freelancer, if this has been done yell at me. I'm going to be updating this as a feel so don't expect it to be done in 2 or 3 days.

New York->
Zone 21 - Area 51/Groom Lake
The Badlands - The Bermuda Triangle
Patrol 27 - Flight 19

Colorado->

California->
Balboa - Spanish explorer, Balboa Park in San Diego

Texas->
Prudhoe - ? Its a town in Texas, and atown in England, I dont get it

Alaska->
Juneau Shipyard - Juneau, Alaska

Cortez->
Edward Kane - ? A film maker?

Magellan->
Bradley - Numerous places in the US and Canada, James Bradley the astronomer

Bering->
Lonestar - the Lonstar State

Kepler->
McKinly - Delaware Revolutionary Figure

Galileo->
Chesapeake - The bay

Dublin->
Battleship Hood - HMS Hood, destroyed by the Bismarck in WW2

Tau 31->
Planet Harris - Scotish Island
Whetstone - The tool, a district in London England

Tau 23->
Java Station - Numerous places

Tau 37->
Falkland Base - The Falklands
Barossa - Barossa Valley in Australia

Omicron Beta->
Hosho Maru - Japanese Aircraft Carrier in WW2
Ruiz - Colombian Volcano

Omicron Theta->
Pygar - Flightless Angel
Vespus - Wing Commander reference

Omicron Gamma->
Cella Dor - Rough translation Holy Dwelling, or Inner Sanctum Dwelling
Kalhemera - A greeting in Greek

Omega 41->
Leon - Place in Spain
Volsung - Warrior in Norse myth