Savegames will do this if you have removed ships... or if any NPC's are still flying them, or wrecks are those ships in question etc.

Run FLScan and see if it can find a bad reference, its in the downloads section.

Yea it could be the saved games. I didn't remove them, I'll try that and see what happens.

I got it, I just had to reinstall the game and then remove the scripts from the mod. Thanks for the help.

If you are having a problem after removing something... 99% of the time, it's either a savegame issue or you need to re-load the SDK and check the Freelancer directories out and make sure that no "junk" remains behind.

Now, that will not always be the case. In the XML Toolkit Mod, for example, I have warned people very specifically about XML scripts that should not be removed unless you are experienced enough to know exactly what they are doing, and why. I've tried to reduce that by as much as I can, but it's difficult to disentangle the scripts without being forced into making permanent INI changes.

Given the way that the mod works, I've tried to avoid that in all of the areas that I think should be entirely optional, like the physics changes, Power Generators, and other things like that, but it's rather hard to do it with everything.

Well I never liked scripts and didn't like them in my mod, I was going to remove the scripts and add all the data into the files. Becuase FLE can't read scripts and just shows up as blank. Plus I never really understood scripts.
I might just use scripts that change things in the game, not add ships, becuase ship scripts have given me a whole lot of pains to mod.

But yea, it left a engine behind and it was causing crashes. I might of added it, but I think I might never find out.