Easiest way to get Capital Ship encounters
Create loadouts for the capital ships you want in loadouts_special.ini (as you would normally do)
in the \missions directory, open npcships.ini. make sure there is a new entry made for the capital ships you want. Make them levels 1 - 30 so that they appear no matter what level you are. (d1, d2, d3, d4, ............d29, d30 for example)
Then open up factionprops.ini, and place the nickname of the ship (the nickname from npcships.ini) in the list under the faction that you want to have them. For example, place liberty_cruiser under li_n_grp or li_p_grp (liberty navy or liberty police)
Now with these things done, go to \missions\encounters and find area_defend.ini Open this file and you will find an encounter that spawns 2 groups of fighters. replace the first reference sc_fighters to sc_cruisers. Make sure its 1, 1 sc_cruisers, otherwise you will have more than one appearing in the same group.
That should be about it. Let me know if you have any problems and Ill try and get back to you as soon as possible. Good luck!
~Strider - oTO
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"In space, no-one can hear you scream!"